Guimarães A.E.D.S, Sharma A, Furlaneto I.P, Rutaihwa L, Cardoso J.F, da Conceição M.L, Spinassé L.B, Machado E, Lopes M.L, Duarte R.S, Gagneux S, Suffys P.N, Lima K.V.B, Conceição E.C. Evaluation of drug susceptibility profile of Mycobacterium tuberculosis Lineage 1 from Brazil based on whole genome sequencing and phenotypic methods. Mem Inst Oswaldo Cruz. 2021;115:e200520. DOI: 10.1590/0074-02760200520

2021
Journal Article
PubMed (33533871)
Link

Menardo F, Rutaihwa L.K, Zwyer M, Borrell S, Comas I, Conceicao E.C, Coscolla M, Cox H, Joloba M, Dou H.Y, Feldmann J, Fenner L, Fyfe J, Gao Q, Garcia de Viedma D, Garcia-Basteiro A.L, Gygli S.M, Hella J, Hiza H, Jugheli L, Kamwela L, Kato-Maeda M, Liu Q, Ley S.D, Loiseau C, Mahasirimongkol S, Malla B, Palittapongarnpim P, Rakotosamimanana N, Rasolofo V, Reinhard M, Reither K, Sasamalo M, Silva Duarte R, Sola C, Suffys P, Batista Lima K.V, Yeboah-Manu D, Beisel C, Brites D, Gagneux S. Local adaptation in populations of Mycobacterium tuberculosis endemic to the Indian Ocean Rim. F1000Res. 2021;10:60. DOI: 10.12688/f1000research.28318.1

2021
Journal Article
PubMed (33732436)
Link

Tufa T.B, Wolfel S, Zubrikova D, Vichova B, Andersson M, Riess R, Rutaihwa L, Fuchs A, Orth H.M, Haussinger D, Feldt T, Poppert S, Dobler G, Bakkes D.K, Chitimia-Dobler L. Tick species from cattle in the Adama Region of Ethiopia and pathogens detected. Exp Appl Acarol. 2021(in press). DOI: 10.1007/s10493-021-00623-5

2021
Journal Article
PubMed (33909190)

Loiseau C, Brites D, Reinhard M, Zurcher K, Borrell S, Ballif M, Fenner L, Cox H, Rutaihwa L.K, Wilkinson R.J, Yotebieng M, Carter E.J, Abimiku A, Marcy O, Gotuzzo E, Avihingsanon A, Zetola N, Doulla B, Bottger E.C, Egger M, Gagneux S. HIV coinfection is associated with low fitness rpoB variants in rifampicin-resistant Mycobacterium tuberculosis. Antimicrob Agents Chemother. 2020;64(10):e00782-20. DOI: 10.1128/AAC.00782-20

2020
Journal Article
PubMed (32718966)
Link

Rutaihwa L. Evolutionary history and molecular epidemiology of Mycobacterium tuberculosis in Tanzania and across Africa. Basel: Univ. Basel, 2020. PhD Thesis, University of Basel, Faculty of Science DOI: 10.5451/unibas-007211639

2020
Thesis
Link

Conceicao E.C, Refregier G, Gomes H.M, Olessa-Daragon X, Coll F, Ratovonirina N.H, Rasolofo-Razanamparany V, Lopes M.L, van Soolingen D, Rutaihwa L, Gagneux S, Bollela V.R, Suffys P.N, Duarte R.S, Lima K.V.B, Sola C.N. Mycobacterium tuberculosis lineage 1 genetic diversity in Para, Brazil, suggests common ancestry with east-African isolates potentially linked to historical slave trade. Infect Genet Evol. 2019;73:337-341. DOI: 10.1016/j.meegid.2019.06.001

2019
Journal Article
PubMed (31170529)

Rutaihwa L, Menardo F, Stucki D, Gygli S.M, Ley S.D, Malla B, Feldmann J, Borrell S, Beisel C, Middelkoop K, Carter J.E, Diero L, Ballif M, Jugheli L, Reither K, Fenner L, Brites D, Gagneux S. Multiple introductions of Mycobacterium tuberculosis lineage 2-Beijing into Africa over centuries. Front Ecol Evol. 2019;7:112. DOI: 10.3389/fevo.2019.00112

2019
Journal Article
Link

Rutaihwa L.K, Sasamalo M, Jaleco A, Hella J, Kingazi A, Kamwela L, Kingalu A, Malewo B, Shirima R, Dötsch A, Feldmann J, Reinhard M, Borrell S, Brites D, Reither K, Doulla B, Fenner L, Gagneux S. Insights into the genetic diversity of Mycobacterium tuberculosis in Tanzania. PLoS One. 2019;14(4):e0206334. DOI: 10.1371/journal.pone.0206334

2019
Journal Article
PubMed (30978186)
Link

Conceição E.C, Guimarães A.E.D.S, Lopes M.L, Furlaneto I.P, Rodrigues Y.C, da Conceição M.L, Barros W.A, Cardoso N.C, Sharma A, Lima L.N.G.C, Gomes H.M, Duarte R.S, Frota C, Rutaihwa L.K, Gagneux S, Suffys P.N, Lima K.V.B. Analysis of potential household transmission events of tuberculosis in the city of Belem, Brazil. Tuberculosis. 2018;113:125-129. DOI: 10.1016/j.tube.2018.09.011

2018
Journal Article
PubMed (30514494)

Menardo F, Loiseau C, Brites D, Coscolla M, Gygli S.M, Rutaihwa L.K, Trauner A, Beisel C, Borrell S, Gagneux S. Treemmer: a tool to reduce large phylogenetic datasets with minimal loss of diversity. BMC Bioinformatics. 2018;19(1):164. DOI: 10.1186/s12859-018-2164-8

2018
Journal Article
PubMed (29716518)
Link

Sikalengo G, Hella J, Mhimbira F, Rutaihwa L.K, Bani F, Ndege R, Sasamalo M, Kamwela L, Said K, Mhalu G, Mlacha Y, Hatz C, Knopp S, Gagneux S, Reither K, Utzinger J, Tanner M, Letang E, Weisser M, Fenner L. Distinct clinical characteristics and helminth co-infections in adult tuberculosis patients from urban compared to rural Tanzania. Infect Dis Poverty. 2018;7:24. DOI: 10.1186/s40249-018-0404-9

2018
Journal Article
PubMed (29580279)
Link

Pohl C, Rutaihwa L.K, Haraka F, Nsubuga M, Aloi F, Ntinginya N.E, Mapamba D, Heinrich N, Hoelscher M, Marais B.J, Jugheli L, Reiter M. Limited value of whole blood Xpert® MTB/RIF for diagnosing tuberculosis in children. J Infect. 2016;73(4):326-335. DOI: 10.1016/j.jinf.2016.04.041

2016
Journal Article
PubMed (27394403)

Stucki D, Brites D, Jeljeli L, Coscolla M, Liu Q, Trauner A, Fenner L, Rutaihwa L, Borrell S, Luo T, Gao Q, Kato-Maeda M, Ballif M, Egger M, Macedo R, Mardassi H, Moreno M, Vilanova G.T, Fyfe J, Globan M, Thomas J, Jamieson F, Guthrie J.L, Asante-Poku A, Yeboah-Manu D, Wampande E, Ssengooba W, Joloba M, Boom W.H, Basu I, Bower J, Saraiva M, Vasconcellos S.E, Suffys P, Koch A, Wilkinson R, Gail-Bekker L, Malla B, Ley S.D, Beck H.P, de Jong B.C, Toit K, Sanchez-Padilla E, Bonnet M, Gil-Brusola A, Frank M, Penlap Beng V.N, Eisenach K, Alani I, Ndung'u P.W, Revathi G, Gehre F, Akter S, Ntoumi F, Stewart-Isherwood L, Ntinginya N.E, Rachow A, Hoelscher M, Cirillo D.M, Skenders G, Hoffner S, Bakonyte D, Stakenas P, Diel R, Crudu V, Moldovan O, Al-Hajoj S, Otero L, Barletta F, Carter E.J, Diero L, Supply P, Comas I, Niemann S, Gagneux S. Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineages. Nat Genet. 2016;48(12):1535-1543. DOI: 10.1038/ng.3704

2016
Journal Article
PubMed (27798628)

Mhalu G, Hella J, Doulla B, Mhimbira F, Mtutu H, Hiza H, Sasamalo M, Rutaihwa L, Rieder H.L, Seimon T, Mutayoba B, Weiss M.G, Fenner L. Do instructional videos on sputum submission result in increased tuberculosis case detection? A randomized controlled trial. PLoS One. 2015;10(9):e0138413. DOI: 10.1371/journal.pone.0138413

2015
Journal Article
PubMed (26418678)
Link

Rutaihwa L, Sasamalo M, Hella J, Borrell S, Feldmann J, Coscolla M, Fenner L, Gagneux S. Global genomic diversity and clinical consequences of Mycobacterium tuberculosis in a high-burden setting. Trop Med Int Health, 2015;20(Suppl. 1):190. Abstracts of the 9th European Congress on Tropical Medicine and International Health, 6-10 September 2015, Basel, Switzerland

2015
Conference Paper

Haraka F, Rutaihwa L.K, Battegay M, Reither K. Mycobacterium intracellulare infection in non-HIV infected patient in a region with a high burden of tuberculosis. BMJ Case Rep. 2012;8 May 2012:bcr0120125713. DOI: 10.1136/bcr.01.2012.5713

2012
Journal Article
PubMed (22605838)