Unit | Malaria Gene Regulation

Malaria is a devastating infectious disease caused by protozoan parasites of the genus Plasmodium that are transmitted to humans via the bite of infected female Anopheles mosquitoes. P. falciparum causes the most severe form of malaria and is responsible for over 200 million clinical cases and 500’000 deaths each year.

In the Malaria Gene Regulation Lab, we study the biology of P. falciparum asexual and sexual blood stage parasites at the molecular and cellular level. Asexual parasites undergo repeated rounds of red blood cell (RBC) invasion and intracellular replication, which is responsible for all malaria disease manifestations. Sexual parasites, i.e. female and male gametocytes, are the only forms of the parasite able to infect the mosquito vector and are hence responsible for malaria transmission. Gametocytes are formed at low frequency from asexual parasites via an epigenetic switch that activates expression of PfAP2-G. The transcription factor PfAP2-G initiates a transcriptional programme driving parasites irreversibly into the sexual differentiation pathway. These cells then develop over the course of 10-12 days into fully differentiated transmissible female or male stage V gametocytes.

Till Voss

Till Voss

Associate Professor for Molecular Parasitology, PhD

Research on Asexual Parasites: Antigenic Variation and Replication

Ultrastructure expansion microscopy image of nuclear division in P. falciparum (Photo: Matthias Wyss)
Ultrastructure expansion microscopy image of nuclear division in P. falciparum (Photo: Matthias Wyss)

Our research on asexual parasites focuses on the molecular mechanisms and players involved in regulating antigenic variation and parasite replication. 

Antigenic variation describes the clonally variant expression of surface antigens. In P. falciparum, antigenic variation is based on epigenetic control mechanisms that facilitate switches in the mutually exclusive expression of one out of 60 var gene paralogs, each of which encodes a different PfEMP1 surface antigen. 

Parasite replication occurs via schizogony, a specialised mode of cell division. During schizogony, 4-5 consecutive cycles of genome replication and nuclear division create a multinucleated cell that then undergoes a single cytokinesis event, resulting in the egress of 20-30 invasive merozoites from the infected RBC.

Research on Sexual Parasites: Mechanisms of Gametocytogenesis

Our research on gametocytes covers the entire process of gametocytogenesis. We are interested in understanding the mechanisms that (1) control sexual commitment and conversion, i.e. the silencing and activation of the pfap2-g locus and the immediate consequences of PfAP2-G expression; (2) take place during the earliest phase of sexual differentiation, where sex-specific features are not yet readily discernible; and (3) are linked to the sex-specific maturation of gametocytes.

Localisation of subpellicular microtubules and the exported protein GEXP02 in a stage III gametocyte. (Photo: Jheanell Johnson, MSc thesis 2025)
Localisation of subpellicular microtubules and the exported protein GEXP02 in a stage III gametocyte. (Photo: Jheanell Johnson, MSc thesis 2025)

Molecular Regulators and Experimental Approaches

The targets of our investigations are most often regulatory factors – such as epigenetic readers/writers, transcription factors and kinases – that are known or suspected to play essential roles in these processes, or that we identified experimentally. 

We study these factors in detail at the functional level using CRISPR/Cas9-based engineering of parasite mutants and their subsequent phenotyping by growth assays, fluorescence microscopy, flow cytometry, transcriptomics, proteomics and other methods

Localisation of Aurora kinase 3 (ARK3), centrin and centromeric histone 3 (CENH3) in a segmenting schizont (from Wyss et al., 2024; PMID: 39235260).
Localisation of Aurora kinase 3 (ARK3), centrin and centromeric histone 3 (CENH3) in a segmenting schizont (from Wyss et al., 2024; PMID: 39235260).

Methodological Innovation

Lastly, our lab is interested in developing improved or new methodology for malaria research. 

We for instance engineered so called “inducible gametocyte producer” lines (3D7/iGP, NF54/iGP) that allow for the routine mass production of synchronous gametocytes. This had previously been extremely difficult to achieve due to the low sexual conversion rates usually observed in parasite in vitro cultures. 

These iGP lines have been a game changer for gametocyte research and are now used by us and many other labs to study various aspects of gametocyte biology at much greater pace and depth. 

In addition, together with the labs of Nicolas Brancucci and Matthias Rottmann (both at Swiss TPH), we developed these iGP lines further into a highly suitable tool for the discovery and preclinical development of malaria transmission blocking drugs.

Legend: Synchronous NF54/iGP gametocytes (modified from Brancucci et al., 2025; PMID: 40715087)
Legend: Synchronous NF54/iGP gametocytes (modified from Brancucci et al., 2025; PMID: 40715087)

Exploring Early Sexual Differentiation in the Malaria Parasite

The SNSF-funded research project focuses on gametocytes, the transmissible forms of the malaria parasite Plasmodium falciparum. The team, together with external collaborators, will apply CRISPR/Cas9 gene editing, super-resolution microscopy techniques and various –omics approaches to study the early phase of gametocyte differentiation and the mechanisms underlying gametocyte sex determination. With this project, the researchers aim to generate novel insight into the molecular and cellular events driving gametocytogenesis, offering potential avenues for the development of urgently needed new interventions for malaria elimination. Read more
 

Nicolas Brancucci (Swiss TPH, Switzerland)

Matthias Rottmann and Pascal Maeser (Swiss TPH, Switzerland)

Alexander Schmidt (Biozentrum, University of Basel, Switzerland)

Matthias Marti (University of Zurich, Switzerland)

Mathieu Brochet (University of Geneva, Switzerland)

Richard Bartfai (Radboud University, The Netherlands)

Artur Scherf (Institut Pasteur, France)

Michael Filarsky (University of Tübingen, Germany)

Zbynek Bozdech (School of Biological Sciences, Nanyang Technological University, Singapore)

Peter Preiser (School of Biological Sciences, Nanyang Technological University, Singapore)

James McCarthy and Matt Dixon (The Walter and Eliza Hall Institute of Medical Research, Australia)

Krishanpal Karmodiya (Indian Institute of Science Education and Research Pune, India)

Daniel Baeschlin (FAST Lab, Novartis Basel, Switzerland)
 

Eilidh Carrington

Elvira Carrio

Michael Filarsky

Nicolas Brancucci

Christian Flueck

Beatriz Graca

Matthias Wyss

Eva Hitz

Travis Basson

Hai Bui

Nicole Bertschi

Sophie Oehring

Kathrin Witmer

Brancucci N.M.B et al. An all-in-one pipeline for the in vitro discovery and in vivo testing of Plasmodium falciparum malaria transmission blocking drugs. Nat Commun. 2025;16:6884. DOI: 10.1038/s41467-025-62014-3

Freville A et al. Expression of the MSPDBL2 antigen in a discrete subset of Plasmodium falciparum schizonts is regulated by GDV1 but may not be linked to sexual commitment. mBio. 2024;15(5):e0314023. DOI: 10.1128/mbio.03140-23

Voss T.S, Brancucci N.M. Regulation of sexual commitment in malaria parasites: a complex affair. Curr Opin Microbiol. 2024;79:102469. DOI: 10.1016/j.mib.2024.102469

Wyss M, Kanyal A, Niederwieser I, Bartfai R, Voss T.S. The Plasmodium falciparum histone methyltransferase PfSET10 is dispensable for the regulation of antigenic variation and gene expression in blood-stage parasites. mSphere. 2024;9(11):e0054624. DOI: 10.1128/msphere.00546-24

Wyss M, Thommen B.T, Kofler J, Carrington E, Brancucci N.M.B, Voss T.S. The three Plasmodium falciparum Aurora-related kinases display distinct temporal and spatial associations with mitotic structures in asexual blood stage parasites and gametocytes. mSphere. 2024;9(9):e0046524. DOI: 10.1128/msphere.00465-24

Wyss M. From antigenic variation to cell cycle progression: a functional analysis of the putative var gene regulator PfSET10 and its interaction partners in Plasmodium falciparum. Basel: Univ. Basel, 2024. Doctoral Thesis, University of Basel, Faculty of Science DOI: 10.5451/unibas-ep96829

Gockel J, Voss T.S, Bártfai R. The troubled puberty of malaria parasites. Trends Parasitol. 2023;39(3):155-157. DOI: 10.1016/j.pt.2023.01.006

Kuehnel R.M et al. A Plasmodium membrane receptor platform integrates cues for egress and invasion in blood forms and activation of transmission stages. Sci Adv. 2023;9(24):eadf2161. DOI: 10.1126/sciadv.adf2161