Publications

Hosch S, Wagner P, Giger J.N, Dubach N, Saavedra E, Perno C.F, Gody J.C, Pagonendji M.S, Ngoagouni C, Ndoua C, Nsanzabana C, Vickos U, Daubenberger C, Schindler T. PHARE: a bioinformatics pipeline for compositional profiling of multiclonal Plasmodium falciparum infections from long-read Nanopore sequencing data. J Antimicrob Chemother. 2024(in press). DOI: 10.1093/jac/dkae060

Abukhattab S, Hosch S, Abu-Rmeileh N.M.E, Hasan S, Vonäsch P, Crump L, Hattendorf J, Daubenberger C, Zinsstag J, Schindler T. Whole-genome sequencing for One Health surveillance of antimicrobial resistance in conflict zones: a case study of Salmonella spp. and Campylobacter spp. in the West Bank, Palestine. Appl Environ Microbiol. 2023;89(9):e00658-23. DOI: 10.1128/aem.00658-23

Bechtold P, Wagner P, Hosch S, Gregorini M, Stark W.J, Gody J.C, Kodia-Lenguetama E.R, Pagonendji M.S, Donfack O.T, Phiri W.P, García G.A, Nsanzabana C, Daubenberger C.A, Schindler T, Vickos U. Development and evaluation of PlasmoPod: a cartridge-based nucleic acid amplification test for rapid malaria diagnosis and surveillance. PLOS Glob Public Health. 2023;3(9):e0001516. DOI: 10.1371/journal.pgph.0001516

Hosch S. Investigating drug resistance markers, evolution and co-infections of pathogens of public health concern using portable molecular detection and sequencing tools. Basel: Univ. Basel, 2023. Doctoral Thesis, University of Basel, Faculty of Science DOI: 10.5451/unibas-ep96039

Jongo S.A, Urbano Nsue Ndong Nchama V, Church L.W.P, Olotu A, Manock S.R, Schindler T, Mtoro A, Kc N, Devinsky O, Zan E, Hamad A, Nyakarungu E, Mpina M, Deal A, Bijeri J.R, Ondo Mangue M.E, Ntutumu Pasialo B.E, Nguema G.N, Rivas M.R, Chemba M, Ramadhani K.K, James E.R, Stabler T.C, Abebe Y, Riyahi P, Saverino E.S, Sax J, Hosch S, Tumbo A, Gondwe L, Segura J.L, Falla C.C, Phiri W.P, Hergott D.E.B, García G.A, Maas C, Murshedkar T, Billingsley P.F, Tanner M, Ayekaba M.O, Sim B.K.L, Daubenberger C, Richie T.L, Abdulla S, Hoffman S.L. Safety and immunogenicity of radiation-attenuated PfSPZ vaccine in equatoguinean infants, children, and adults. Am J Trop Med Hyg. 2023;109(1):138-146. DOI: 10.4269/ajtmh.22-0773

Hosch S, Mpina M, Nyakurungu E, Silochi Borico N, Obama T.M.A, Ovona M.C, Wagner P, Rubin S.E, Vickos U, Milang D.V.N, Ondo'o Ayekaba M, Phiri W.P, Daubenberger C.A, Schindler T. Genomic surveillance enables the identification of co-infections with multiple SARS-CoV-2 lineages in equatorial Guinea. Front Public Health. 2022;9:818401. DOI: 10.3389/fpubh.2021.818401

Hosch S, Yoboue C.A, Donfack O.T, Guirou E.A, Dangy J.P, Mpina M, Nyakurungu E, Blöchliger K, Guerra C.A, Phiri W.P, Ayekaba M.O, García G.A, Tanner M, Daubenberger C, Schindler T. Analysis of nucleic acids extracted from rapid diagnostic tests reveals a significant proportion of false positive test results associated with recent malaria treatment. Malar J. 2022;21:23. DOI: 10.1186/s12936-022-04043-7

Tegally H, San J.E, Cotten M, Moir M, Tegomoh B, Mboowa G, Martin D.P, Baxter C, Lambisia A.W, Diallo A, Amoako D.G, Diagne M.M, Sisay A, Zekri A.N, Gueye A.S, Sangare A.K, Ouedraogo A.S, Sow A, Musa A.O, Sesay A.K, Abias A.G, Elzagheid A.I, Lagare A, Kemi A.S, Abar A.E, Johnson A.A, Fowotade A, Oluwapelumi A.O, Amuri A.A, Juru A, Kandeil A, Mostafa A, Rebai A, Sayed A, Kazeem A, Balde A, Christoffels A, Trotter A.J, Campbell A, Keita A.K, Kone A, Bouzid A, Souissi A, Agweyu A, Naguib A, Gutierrez A.V, Nkeshimana A, Page A.J, Yadouleton A, Vinze A, Happi A.N, Chouikha A, Iranzadeh A, Maharaj A, Batchi-Bouyou A.L, Ismail A, Sylverken A.A, Goba A, Femi A, Sijuwola A.E, Marycelin B, Salako B.L, Oderinde B.S, Bolajoko B, Diarra B, Herring B.L, Tsofa B, Lekana-Douki B, Mvula B, Njanpop-Lafourcade B.M, Marondera B.T, Khaireh B.A, Kouriba B, Adu B, Pool B, McInnis B, Brook C, Williamson C, Nduwimana C, Anscombe C, Pratt C.B, Scheepers C, Akoua-Koffi C.G, Agoti C.N, Mapanguy C.M, Loucoubar C, Onwuamah C.K, Ihekweazu C, Malaka C.N, Peyrefitte C, Grace C, Omoruyi C.E, Rafaï C.D, Morang'a C.M, Erameh C, Lule D.B, Bridges D.J, Mukadi-Bamuleka D, Park D, Rasmussen D.A, Baker D, Nokes D.J, Ssemwanga D, Tshiabuila D, Amuzu D.S.Y, Goedhals D, Grant D.S, Omuoyo D.O, Maruapula D, Wanjohi D.W, Foster-Nyarko E, Lusamaki E.K, Simulundu E, Ong'era E.M, Ngabana E.N, Abworo E.O, Otieno E, Shumba E, Barasa E, Ahmed E.B, Ahmed E.A, Lokilo E, Mukantwari E, Philomena E, Belarbi E, Simon-Loriere E, Anoh E.A, Manuel E, Leendertz F, Taweh F.M, Wasfi F, Abdelmoula F, Takawira F.T, Derrar F, Ajogbasile F.V, Treurnicht F, Onikepe F, Ntoumi F, Muyembe F.M, Ragomzingba F.E.Z, Dratibi F.A, Iyanu F.A, Mbunsu G.K, Thilliez G, Kay G.L, Akpede G.O, van Zyl G.U, Awandare G.A, Kpeli G.S, Schubert G, Maphalala G.P, Ranaivoson H.C, Omunakwe H.E, Onywera H, Abe H, Karray H, Nansumba H, Triki H, Kadjo H.A.A, Elgahzaly H, Gumbo H, Mathieu H, Kavunga-Membo H, Smeti I, Olawoye I.B, Adetifa I.M.O, Odia I, Ben Boubaker I.B, Mohammad I.A, Ssewanyana I, Wurie I, Konstantinus I.S, Halatoko J.W.A, Ayei J, Sonoo J, Makangara J.C, Tamfum J.M, Heraud J.M, Shaffer J.G, Giandhari J, Musyoki J, Nkurunziza J, Uwanibe J.N, Bhiman J.N, Yasuda J, Morais J, Kiconco J, Sandi J.D, Huddleston J, Odoom J.K, Morobe J.M, Gyapong J.O, Kayiwa J.T, Okolie J.C, Xavier J.S, Gyamfi J, Wamala J.F, Bonney J.H.K, Nyandwi J, Everatt J, Nakaseegu J, Ngoi J.M, Namulondo J, Oguzie J.U, Andeko J.C, Lutwama J.J, Mogga J.J.H, O'Grady J, Siddle K.J, Victoir K, Adeyemi K.T, Tumedi K.A, Carvalho K.S, Mohammed K.S, Dellagi K, Musonda K.G, Duedu K.O, Fki-Berrajah L, Singh L, Kepler L.M, Biscornet L, de Oliveira Martins L, Chabuka L, Olubayo L, Ojok L.D, Deng L.L, Ochola-Oyier L.I, Tyers L, Mine M, Ramuth M, Mastouri M, ElHefnawi M, Mbanne M, Matsheka M.I, Kebabonye M, Diop M, Momoh M, Lima Mendonça M.D.L, Venter M, Paye M.F, Faye M, Nyaga M.M, Mareka M, Damaris M.M, Mburu M.W, Mpina M.G, Owusu M, Wiley M.R, Tatfeng M.Y, Ayekaba M.O, Abouelhoda M, Beloufa M.A, Seadawy M.G, Khalifa M.K, Matobo M.M, Kane M, Salou M, Mbulawa M.B, Mwenda M, Allam M, Phan M.V.T, Abid N, Rujeni N, Abuzaid N, Ismael N, Elguindy N, Top N.M, Dia N, Mabunda N, Hsiao N.Y, Silochi N.B, Francisco N.M, Saasa N, Bbosa N, Murunga N, Gumede N, Wolter N, Sitharam N, Ndodo N, Ajayi N.A, Tordo N, Mbhele N, Razanajatovo N.H, Iguosadolo N, Mba N, Kingsley O.C, Sylvanus O, Femi O, Adewumi O.M, Testimony O, Ogunsanya O.A, Fakayode O, Ogah O.E, Oludayo O.E, Faye O, Smith-Lawrence P, Ondoa P, Combe P, Nabisubi P, Semanda P, Oluniyi P.E, Arnaldo P, Quashie P.K, Okokhere P.O, Bejon P, Dussart P, Bester P.A, Mbala P.K, Kaleebu P, Abechi P, El-Shesheny R, Joseph R, Aziz R.K, Essomba R.G, Ayivor-Djanie R, Njouom R, Phillips R.O, Gorman R, Kingsley R.A, Neto Rodrigues Rmdesa, Audu R.A, Carr R.A.A, Gargouri S, Masmoudi S, Bootsma S, Sankhe S, Mohamed S.I, Femi S, Mhalla S, Hosch S, Kassim S.K, Metha S, Trabelsi S, Agwa S.H, Mwangi S.W, Doumbia S, Makiala-Mandanda S, Aryeetey S, Ahmed S.S, Ahmed S.M, Elhamoumi S, Moyo S, Lutucuta S, Gaseitsiwe S, Jalloh S, Andriamandimby S.F, Oguntope S, Grayo S, Lekana-Douki S, Prosolek S, Ouangraoua S, van Wyk S, Schaffner S.F, Kanyerezi S, Ahuka-Mundeke S, Rudder S, Pillay S, Nabadda S, Behillil S, Budiaki S.L, van der Werf S, Mashe T, Mohale T, Le-Viet T, Velavan T.P, Schindler T, Maponga T.G, Bedford T, Anyaneji U.J, Chinedu U, Ramphal U, George U.E, Enouf V, Nene V, Gorova V, Roshdy W.H, Karim W.A, Ampofo W.K, Preiser W, Choga W.T, Ahmed Y.A, Ramphal Y, Bediako Y, Naidoo Y, Butera Y, de Laurent Z.R, Ouma A.E.O, von Gottberg A, Githinji G, Moeti M, Tomori O, Sabeti P.C, Sall A.A, Oyola S.O, Tebeje Y.K, Tessema S.K, de Oliveira T, Happi C, Lessells R, Nkengasong J, Wilkinson E. The evolving SARS-CoV-2 epidemic in Africa: insights from rapidly expanding genomic surveillance. Science. 2022;378(6615):eabq5358. DOI: 10.1126/science.abq5358

Yoboue C.A, Hosch S, Donfack O.T, Guirou E.A, Nlavo B.M, Ayekaba M.O, Guerra C, Phiri W.P, Garcia G.A, Schindler T, Daubenberger C.A. Characterising co-infections with Plasmodium spp., Mansonella perstans or Loa loa in asymptomatic children, adults and elderly people living on Bioko Island using nucleic acids extracted from malaria rapid diagnostic tests. PLoS Negl Trop Dis. 2022;16(1):e0009798. DOI: 10.1371/journal.pntd.0009798

Bechtold P, Wagner P, Hosch S, Siegrist D, Ruiz-Serrano A, Gregorini M, Mpina M, Ondó F.A, Obama J, Ayekaba M.O, Engler O, Stark W.J, Daubenberger C.A, Schindler T. Rapid identification of SARS-CoV-2 variants of concern using a portable peakPCR platform. Anal Chem. 2021;93(49):16350-16359. DOI: 10.1021/acs.analchem.1c02368

Dudas G, Hong S.L, Potter B.I, Calvignac-Spencer S, Niatou-Singa F.S, Tombolomako T.B, Fuh-Neba T, Vickos U, Ulrich M, Leendertz F.H, Khan K, Huber C, Watts A, Olendraite I, Snijder J, Wijnant K.N, Bonvin Amjj, Martres P, Behillil S, Ayouba A, Maidadi M.F, Djomsi D.M, Godwe C, Butel C, Simaitis A, Gabrielaite M, Katenaite M, Norvilas R, Raugaite L, Koyaweda G.W, Kandou J.K, Jonikas R, Nasvytiene I, Zemeckiene Z, Gečys D, Tamusauskaite K, Norkiene M, Vasiliunaite E, Žiogienė D, Timinskas A, Šukys M, Šarauskas M, Alzbutas G, Aziza A.A, Lusamaki E.K, Cigolo J.M, Mawete F.M, Lofiko E.L, Kingebeni P.M, Tamfum J.M, Belizaire M.R.D, Essomba R.G, Assoumou M.C.O, Mboringong A.B, Dieng A.B, Juozapaite D, Hosch S, Obama J, Ayekaba M.O, Naumovas D, Pautienius A, Rafaï C.D, Vitkauskienė A, Ugenskienė R, Gedvilaitė A, Čereškevičius D, Lesauskaitė V, Žemaitis L, Griškevičius L, Baele G. Emergence and spread of SARS-CoV-2 lineage B.1.620 with variant of concern-like mutations and deletions. Nat Commun. 2021;12:5769. DOI: 10.1038/s41467-021-26055-8

Jongo S.A, Urbano V, Church L.W.P, Olotu A, Manock S.R, Schindler T, Mtoro A, Kc N, Hamad A, Nyakarungu E, Mpina M, Deal A, Bijeri J.R, Ondo Mangue M.E, Ntutumu Pasialo B.E, Nguema G.N, Owono S.N, Rivas M.R, Chemba M, Kassim K.R, James E.R, Stabler T, Abebe Y, Saverino E, Sax J, Hosch S, Tumbo A.M, Gondwe L, Segura J.L, Falla C.C, Phiri W.P, Hergott D.E.B, Garcia G.A, Schwabe C, Maas C.D, Murshedkar T, Billingsley P.F, Tanner M, Ayekaba M.O, Sim B.K.L, Daubenberger C, Richie T.L, Abdulla S, Hoffman S.L. Immunogenicity and protective efficacy of radiation-attenuated and chemo-attenuated PfSPZ vaccines in Equatoguinean adults. Am J Trop Med Hyg. 2021;104(1):283-293. DOI: 10.4269/ajtmh.20-0435

Guirou E.A, Schindler T, Hosch S, Donfack O.T, Yoboue C.A, Krähenbühl S, Deal A, Cosi G, Gondwe L, Mwangoka G, Masuki H, Salim N, Mpina M, Said J, Abdualla S, Hoffmann S.L, Nlavo B.N, Maas C, Cortes Falla C, Phiri W.O, Garcia G.A, Tanner M, Daubenberger C. Molecular malaria surveillance using a novel protocol for extraction and analysis of nucleic acids retained on used rapid diagnostic tests. Sci Rep. 2020;10:12305. DOI: 10.1038/s41598-020-69268-5

Krähenbühl S, Studer F, Guirou E, Deal A, Mächler P, Hosch S, Mpina M, Mswata S, Daubenberger C, Schindler T. ELIMU-MDx: a web-based, open-source platform for storage, management and analysis of diagnostic qPCR data. Biotechniques. 2020;68(1):22-27. DOI: 10.2144/btn-2019-0064